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L.: Evolutionary and biomedical insights within the rhesus macaque genome. Science 2007, 316:222?34. 2. Vallender EJ: Expanding whole exome resequencing into non-human primates. Genome Biol 2011, 12:R87. 3. Zhang X, Goodsell J, Norgren RB: Limits of your rhesus macaque draft genome assembly and annotation. BMC Genomics 2012, thirteen:206. four. Norgren RB: Improving upon genome assemblies and annotations for nonhuman primates. ILAR J 2013, 54:a hundred and forty four?fifty three. five. Roberto R, Misceo D, D'Addabbo P, Archidiacono N, Rocchi M: Refinement of macaque synteny arrangement with respect to your official rheMac2 macaque sequence assembly. Chromosome Res 2008, sixteen:977?85. six. Zhang SJ, Liu CJ, Shi M, Kong L, Chen JY, Zhou WZ, Zhu X, Yu P, Wang J, Yang X, Hou N, Ye Z, Zhang R, Xiao R, Zhang X, Li CY: RhesusBase: a knowledgebase for that monkey investigation neighborhood. Nucleic Acids Res 2013, 41:D892 905. 7. Peng X, Pipes L, Xiong H, Green RR, Jones DC, Ruzzo WL, Schroth GP, Mason CE, Palermo RE, Katze MG: Evaluation and advancement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations working with deep transcriptome sequencing facts. J Med Primatol 2014, forty three:317?28. eight. Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/3081428 Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, et al.: Genome sequencing and comparison of two nonhuman primate animal versions, the cynomolgus and Chinese rhesus macaques. Nat Biotechnol 2011, 29:1019?023. 201. 9. Zimin AV, Mar is G, Puiu D, Roberts M, Salzberg SL, Yorke JA: The MaSuRCA genome assembler. Bioinformatics 2013, 29:2669?677. 10. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Essential area alignment research tool. J Mol Biol 1990, 215:403?ten. eleven. Karere GM, Froenicke L, Millon L, Womack JE, Lyons LA: A high-resolution radiation hybrid map of rhesus macaque chromosome five identifies rearrangements during the genome assembly. Genomics 2008, ninety two:210?18. 12. Murphy WJ, Agarwala R, Sch fer AA, Stephens R, Smith C Jr, Crumpler NJ, David VA, O'Brien SJ: A rhesus macaque radiation hybrid map and comparative analysis using the human genome. Genomics 2005, 86:383?95. thirteen. Ventura M, Ventura M, Antonacci F, Cardone MF, Stanyon R, D'Addabbo P, Cellamare A, Sprague LJ, Eichler EE, Archidiacono N, Rocchi M: Evolutionary development of new centromeres in macaque. Science 2007, 316:243?46. fourteen. Rocchi M: Synteny block corporation of Macaca mulatta. 2013, [http://www.biologia.uniba.it/macaque/] 15. Zhang Z, Schwartz S, Wagner L, Miller W: PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/9221828 A greedy algorithm for aligning DNA sequences. J Comput Biol 2000, 7:203?fourteen. sixteen. Wienberg J, Stanyon R, Jauch A, Cremer T: Homologies in human and Macaca fuscata chromosomes revealed by in situ suppression hybridization with human chromosome distinct DNA libraries. Chromosoma 1992, a hundred and one:265?70.17. Rogers J, Garcia R, Shelledy W, Kaplan J, Arya A, Johnson Z, Bergstrom M, Novakowski L, Nair P, Vinson A, Newman D, Heckman G, Cameron J: An Letrozole original genetic linkage map in the rhesus macaque (Macaca mulatta) genome utilizing human microsatellite loci. Genomics 2006, 87:thirty?eight. eighteen. Homer N, Merriman B: TMAP: the Torrent Mapping Alignment Software. [https://github.com/iontorrent/TS/tree/master/Analysis/TMAP] 19. Zerbino DR, Birney E: Velvet: algorithms for de novo limited go through assembly employing de Bruijn graphs. Genome Res 2008, 18:821?29. 20. Schulz MH, Zerbino DR, Vingron M, Birney E: Oases: Robus.

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